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Biochemical Space

Processes

+ Cyanobacterium in its environment
o Environmental processes
+ Cellular processes
o Respiration and photosynthesis
o Carbon concentrating mechanism (CCM)
o Respiration
o Clock mechanism
o Metabolism

Navigation
Below is displayed the entity view of the selected entity. Entity view is shown in the form of scheme expressing relations part of (green), contains (orange), substrate of rule (red) and product of rule (blue). The navigation panel on the left shows the entity in corresponding model and allows you to browse the biological structure of the model. Manipulation with the navigation panel is realized by unfolding the items in the navigation tree and clicking on a requested system level.

Annotations Tab
All the annotation links to relevant databases for the currently selected entity are displayed on the Annotation Tab below the scheme.

Models Tab
The Models Tab displays all models containing selected entity.

Relations Tab
Relations Tab contains information about relations in which selected entity figures. There are several types of relations: part of, contains, partial composition items and full composition items. This tab also contains organism info which is optional.

Rules Tab
Rules tab contains list of rules which contains selected entity.

Processes Tab
This tab contains set of processes in which selected entity is present.

circadian clock protein KaiB [KaiB]

Component of the circadian clock protein system. It decreases the phosphorylation status of KaiC.

Annotations
Models
Relations
Rules
Processes
+External links
uniprot:Q79PF5
+Miyoshi et al. 2007
+Clock mechanism
Details

Part of:

+cytosol

Organism info:

Synechococcus elongatus PCC 7942{Synpcc7942_1217}
+KaiB dimer formation and dissociation
Formation of KaiB dimer from two KaiB molecules and its dissociation.
Rule: 2 KaiB::cyt <=> KaiB2::cyt
Details
+KaiB6C6 complex formation and dissociation
Formation of complex from six KaiB molecules and KaiC hexamer and its dissociation.
Rule: 6 KaiB::cyt + KaiC6::cyt <=> KaiB6C6::cyt
Details
+KaiA4B6C6 complex formation and dissociation
Formation of complex from six KaiB molecules and KaiA4C6 complex and its dissociation.
Rule: 6 KaiB::cyt + KaiA4C6::cyt <=> KaiA4B6C6::cyt
Details
+Translation of KaiB and KaiC
Translation of KaiB and KaiC proteins from its shared mRNA.
Rule: kaiBC_mRNA::cyt => KaiB::cyt + KaiC::cyt
Details
+KaiB degradation
Degradation of KaiB protein.
Rule: KaiB::cyt =>
Details
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI