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Biochemical Space

Processes

+ Cyanobacterium in its environment
o Environmental processes
+ Cellular processes
o Respiration and photosynthesis
o Carbon concentrating mechanism (CCM)
o Respiration
o Clock mechanism
o Metabolism

Navigation
Below is displayed the entity view of the selected entity. Entity view is shown in the form of scheme expressing relations part of (green), contains (orange), substrate of rule (red) and product of rule (blue). The navigation panel on the left shows the entity in corresponding model and allows you to browse the biological structure of the model. Manipulation with the navigation panel is realized by unfolding the items in the navigation tree and clicking on a requested system level.

Annotations Tab
All the annotation links to relevant databases for the currently selected entity are displayed on the Annotation Tab below the scheme.

Models Tab
The Models Tab displays all models containing selected entity.

Relations Tab
Relations Tab contains information about relations in which selected entity figures. There are several types of relations: part of, contains, partial composition items and full composition items. This tab also contains organism info which is optional.

Rules Tab
Rules tab contains list of rules which contains selected entity.

Processes Tab
This tab contains set of processes in which selected entity is present.

mRNA encoding KaiB and KaiC proteins [kaiBC_mRNA]

Molecule of mRNA transferring the code for circadian clock proteins KaiB and KaiC.

Annotations
Models
Relations
Rules
Processes
+External links
uniprot:Q79PF4
uniprot:Q79PF5
+Miyoshi et al. 2007
+Hertel et al. 2013
+Clock mechanism
Details

Part of:

+cytosol

Organism info:

Synechococcus elongatus PCC 7942{Synpcc7942_1216,Synpcc7942_1217}
+Transcription of kaiBC_mRNA
Transcription of shared mRNA for KaiA and KaiB protein.
Rule: => kaiBC_mRNA::cyt
Details
+Translation of KaiB and KaiC
Translation of KaiB and KaiC proteins from its shared mRNA.
Rule: kaiBC_mRNA::cyt => KaiB::cyt + KaiC::cyt
Details
+kaiBC mRNA degradation
Degradation of mRNA encoding kaiB and kaiC genes.
Rule: kaiBC_mRNA::cyt =>
Details
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI