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Biochemical Space

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Below is displayed the entity view of the selected entity. Entity view is shown in the form of scheme expressing relations part of (green), contains (orange), substrate of rule (red) and product of rule (blue). The navigation panel on the left shows the entity in corresponding model and allows you to browse the biological structure of the model. Manipulation with the navigation panel is realized by unfolding the items in the navigation tree and clicking on a requested system level.

Annotations Tab
All the annotation links to relevant databases for the currently selected entity are displayed on the Annotation Tab below the scheme.

Models Tab
The Models Tab displays all models containing selected entity.

Relations Tab
Relations Tab contains information about relations in which selected entity figures. There are several types of relations: part of, contains, partial composition items and full composition items. This tab also contains organism info which is optional.

Rules Tab
Rules tab contains list of rules which contains selected entity.

Processes Tab
This tab contains set of processes in which selected entity is present.

water [H2O]

An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms.

Part of:

ATP synthesis, proton translocation from periplasm to cytoplasm
Rule: 3 ADP::cyt + 3 orthophosphate::cyt + 14 h{+}::pps => 3 ATP::cyt + 14 h{+}::cyt + 3 H2O::cyt
modifier: ATPase
Details
ATP synthesis, proton translocation from thylakoid lumen to cytoplasm
Rule: 3 ADP::cyt + 3 orthophosphate::cyt + 14 h{+}::lum => 3 ATP::cyt + 14 h{+}::cyt + 3 H2O::cyt
modifier: ATPase
Details
oxidation of plastoquinole in the cytoplasmic membrane
Rule: pqh2::cym + O2::cyt + 2 h{+}::cyt => pq::cym + 2 H2O::cyt
modifier: CydBD
Details
oxidation of plastoquinole in the thylakoid membrane
Rule: pqh2::tlm + O2::lum + 2 h{+}::lum => pq::tlm + 2 H2O::lum
modifier: CydBD
Details
oxidation of plastocyanin in the periplasmatic space, proton translocation from cytoplasm (cyt) to periplasmatic space (pps)
Rule: 4 pc{-}::pps + O2::pps + 8 h{+}::cyt => 4 pc{+}::pps + 2 H2O::pps + 4 h{+}::pps
modifier: Cox
Details
oxidation of plastocyanin in the thylakoid lumen, proton translocation from cytoplasm (cyt) to thylakoid lumen (lum)
Rule: 4 pc{-}::lum + O2::lum + 8 h{+}::cyt => 4 pc{+}::lum + 2 H2O::lum + 4 h{+}::lum
modifier: Cox
Details
oxidation of NADPH and reduction of plastoquinone in the thylakoid membrane
Rule: NADPH::cyt + 4 h{+}::cyt + pq::cym + H2O::cyt + CO2::pps => NADP{+}::cyt + 4 h{+}::pps + pqh2::cym + HCO3{-}::cyt
modifier: NDH1_4
Details
oxidation of NADPH and reduction of plastoquinone in the thylakoid membrane
Rule: NADPH::cyt + 4 h{+}::cyt + pq::tlm + H2O::cyt + CO2::lum => NADP{+}::cyt + 4 h{+}::lum + pqh2::tlm + HCO3{-}::cyt
modifier: NDH1_3
Details
Carbon dioxide hydration
Rule: CO2::liq + H2O::liq <=> HCO3{-}::liq + h{+}::liq
Details
Water self-dissociation.
Rule: H2O::liq <=> h{+}::liq + OH{-}::liq
Details
Bicarbonate/carbonate conversion at high pH.
Rule: HCO3{-}::liq + OH{-}::liq <=> CO3{2-}::liq + H2O::liq
Details
Rule: C00944::cyt <=> C02637::cyt + H2O::cyt
modifier: 4-2-1-10
Details
Rule: C00064::cyt + H2O::cyt <=> C00025::cyt + C00014::cyt
modifier: 3-5-1-2
Details
Rule: C03912::cyt + H2O::cyt <=> C01165::cyt
Details
Rule: C00244::cyt + 2 fd{-}::cyt + 2 h{+}::cyt => C00088::cyt + H2O::cyt + 2 fd{+}::cyt
modifier: 1-7-7-2
Details
Rule: C00088::cyt + 6 fd{-}::cyt + 7 h{+}::cyt => C00014::cyt + 2 H2O::cyt + 6 fd{+}::cyt
modifier: 1-7-7-1
Details
Rule: C00062::cyt + H2O::cyt => C00327::cyt + C00014::cyt
modifier: 3-5-3-6
Details
Rule: C03771::cyt + C00027::cyt => C01035::cyt + CO2::cyt + H2O::cyt
Details
Rule: C00086::cyt + H2O::cyt => CO2::cyt + 2 C00014::cyt
modifier: 3-5-1-5
Details
Rule: C00152::cyt + H2O::cyt => C00049::cyt + C00014::cyt
modifier: 3-5-1-1
Details
Rule: C05430::cyt + NADPH::cyt + h{+}::cyt + O2::cyt => C05431::cyt + 2 H2O::cyt + NADP{+}::cyt
Details
Rule: C05431::cyt + NADPH::cyt + h{+}::cyt + O2::cyt => C05432::cyt + 2 H2O::cyt + NADP{+}::cyt
Details
Rule: C02094::cyt + NADPH::cyt + h{+}::cyt + O2::cyt => C08592::cyt + NADP{+}::cyt + H2O::cyt + h{+}::cyt
Details
Rule: 2 C01079::cyt + 3 O2::cyt => 2 C02191::cyt + 6 H2O::cyt
modifier: 1-3-3-4
Details
Rule: C00044::cyt + H2O::cyt => C04895::cyt + C00058::cyt
modifier: 3-5-4-16
Details
Rule: C00094::cyt + 6 fd{-}::cyt + 6 h{+}::cyt => C00283::cyt + 6 fd{+}::cyt + 3 H2O::cyt
modifier: 1-8-7-1
Details
Rule: C01419::cyt + H2O::cyt => C00097::cyt + C00037::cyt
modifier: 3-4-11-2, 3-4-11-1
Details
Rule: C00842::cyt => C11907::cyt + H2O::cyt
modifier: 4-2-1-46
Details
Rule: C01929::cyt + H2O::cyt + NAD+::cyt => C00135::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-23
Details
Rule: C02504::cyt => C02631::cyt + H2O::cyt
modifier: 4-2-1-33
Details
Rule: C02631::cyt + H2O::cyt => C04411::cyt
modifier: 4-2-1-33
Details
Rule: C01203::cyt + NADPH::cyt + h{+}::cyt + O2::cyt <=> C16160::cyt + NADP{+}::cyt + 2 H2O::cyt
modifier: 1-14-19-x
Details
Rule: C16160::cyt + NADPH::cyt + h{+}::cyt + O2::cyt <=> C16161::cyt + NADP{+}::cyt + 2 H2O::cyt
modifier: 1-14-19-x
Details
Rule: C00033::cyt + NADH::cyt + h{+}::cyt => C00084::cyt + NAD+::cyt + H2O::cyt
modifier: 1-2-1-3
Details
Rule: C00130::cyt + H2O::cyt <=> C04734::cyt
modifier: 2-1-2-3
Details
Rule: C05198::cyt + H2O::cyt => E19::cyt + C00147::cyt
Details
Rule: C00130::cyt + NAD+::cyt + H2O::cyt => C00655::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-205
Details
Rule: C00458::cyt + H2O::cyt => C00460::cyt + C00014::cyt
modifier: 3-5-4-13
Details
Rule: C00063::cyt + H2O::cyt => C00075::cyt + C00014::cyt
modifier: 3-5-4-13
Details
Rule: C03885::cyt + 4 h{+}::cyt => C17570::cyt + H2O::cyt
Details
Rule: C00179::cyt + H2O::cyt => C00134::cyt + C00086::cyt
modifier: 3-5-3-11
Details
Rule: C00182::cyt + H2O::cyt => C00031::cyt + C00182N::cyt
modifier: 3-2-1-x
Details
Rule: E10::cyt + 2 H2O::cyt => 1 C00049::cyt + 1 C00062::cyt + E10N::cyt
modifier: 3-4-15-6
Details
Rule: H2O::ext <=> H2O::cyt
Details
Rule: C00064::ext + ATP::cyt + H2O::cyt => C00064::cyt + ADP::cyt + orthophosphate::cyt
modifier: 3-6-3-x
Details
Rule: C00062::ext + ATP::cyt + H2O::cyt => C00062::cyt + ADP::cyt + orthophosphate::cyt
modifier: 3-6-3-x
Details
Rule: ATP::cyt + H2O::cyt + C00059::ext => ADP::cyt + orthophosphate::cyt + C00059::cyt
modifier: 3-6-3-25
Details
Rule: C00038::ext + ATP::cyt + H2O::cyt => C00038::cyt + ADP::cyt + orthophosphate::cyt
modifier: 3-6-3-x
Details
Rule: H2O::cyt <=> H2O::lum
Details
Rule: H2O::pps <=> H2O::cyt
Details
Fixation of CO2 and formation of PGA in carboxysome
Rule: C01182::cax + CO2::cax + H2O::cax <=> 2 PGA::cax
modifier: 4-1-1-39
Details