Models
Matrix analysis of Jablonsky et al. 2014
This page displays elementary flux modes analysis for selected model.
You can view information about desired mode clicking on it. Information about corresponding reactions will unfold.
You can also download SBRML file clicking on link below.
List of Matrix:
Reactions:
-1 * GL_2a : GAP + NADPp + Pi ↔ BPGA + NADPH, GAP + NADPp = PGA + NADPH
1 * GL_2b : GAP + NADPp + Pi ↔ BPGA + NADPH, GAP + NADPp = PGA + NADPH
-1 * GL_2a : GAP + NADPp + Pi ↔ BPGA + NADPH, GAP + NADPp = PGA + NADPH
1 * GL_2b : GAP + NADPp + Pi ↔ BPGA + NADPH, GAP + NADPp = PGA + NADPH
Reactions:
-1 * GL_3a : 3PGA ↔ 2PGA, PGA = ppGA
1 * GL_3b : 3PGA ↔ 2PGA, PGA = ppGA
-1 * GL_3a : 3PGA ↔ 2PGA, PGA = ppGA
1 * GL_3b : 3PGA ↔ 2PGA, PGA = ppGA
Reactions:
-1 * GL_3a : 3PGA ↔ 2PGA, PGA = ppGA
1 * GL_3c : 3PGA ↔ 2PGA, PGA = ppGA
-1 * GL_3a : 3PGA ↔ 2PGA, PGA = ppGA
1 * GL_3c : 3PGA ↔ 2PGA, PGA = ppGA
Reactions:
-1 * GL_3b : 3PGA ↔ 2PGA, PGA = ppGA
1 * GL_3c : 3PGA ↔ 2PGA, PGA = ppGA
-1 * GL_3b : 3PGA ↔ 2PGA, PGA = ppGA
1 * GL_3c : 3PGA ↔ 2PGA, PGA = ppGA
Reactions:
1 * GL_2a : GAP + NADPp + Pi ↔ BPGA + NADPH, GAP + NADPp = PGA + NADPH
1 * CC_3 : BPGA + NADPH ↔ GAP + NADPp + Pi, BPGA + NADPH -> GAP + NADPp + Pi
1 * CC_2 : 3PGA + ATP → BPGA + ADP, PGA + ATP -> BPGA + ADP
1 * LIGHT_1 : ADP + Pi → ATP, ADP + Pi -> ATP
1 * GL_2a : GAP + NADPp + Pi ↔ BPGA + NADPH, GAP + NADPp = PGA + NADPH
1 * CC_3 : BPGA + NADPH ↔ GAP + NADPp + Pi, BPGA + NADPH -> GAP + NADPp + Pi
1 * CC_2 : 3PGA + ATP → BPGA + ADP, PGA + ATP -> BPGA + ADP
1 * LIGHT_1 : ADP + Pi → ATP, ADP + Pi -> ATP
Reactions:
1 * GL_2b : GAP + NADPp + Pi ↔ BPGA + NADPH, GAP + NADPp = PGA + NADPH
1 * CC_3 : BPGA + NADPH ↔ GAP + NADPp + Pi, BPGA + NADPH -> GAP + NADPp + Pi
1 * CC_2 : 3PGA + ATP → BPGA + ADP, PGA + ATP -> BPGA + ADP
1 * LIGHT_1 : ADP + Pi → ATP, ADP + Pi -> ATP
1 * GL_2b : GAP + NADPp + Pi ↔ BPGA + NADPH, GAP + NADPp = PGA + NADPH
1 * CC_3 : BPGA + NADPH ↔ GAP + NADPp + Pi, BPGA + NADPH -> GAP + NADPp + Pi
1 * CC_2 : 3PGA + ATP → BPGA + ADP, PGA + ATP -> BPGA + ADP
1 * LIGHT_1 : ADP + Pi → ATP, ADP + Pi -> ATP
Analysis data: SBRML
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI