Username:
Password:
Register
Reset password

Model repository

Models

+ Miyoshi et al. 2007
+ Plyusnina et al. (in prep.)
+ Hertel et al. 2013
+ Jablonsky et al. 2014
+ Clark et al. 2014 (in progress)
+ Fridlyand et al. 1995
o Grimaud et al. 2014
o E-cyano team 2017, clock & C-N metabolism
o Müller et al. 2019

Matrix analysis of Clark et al. 2014 (in progress)

This page displays elementary flux modes analysis for selected model.

You can view information about desired mode clicking on it. Information about corresponding reactions will unfold.

You can also download SBRML file clicking on link below.


Modes
List of Matrix:

+1# Irreversible
Reactions:
1 * HCO3 Dehydration cyt, HCO3_cyt -> CO2_cyt
1 * CO2 Hydration cyt, CO2_cyt -> HCO3_cyt
+2# Irreversible
Reactions:
1 * HCO3 Dehydration carb, HCO3_carb -> CO2_carb
1 * CO2 Hydration carb, CO2_carb -> HCO3_carb
+3# Irreversible
Reactions:
1 * HCO3 carboxysome transport in, HCO3_cyt = HCO3_carb
1 * HCO3 Dehydration carb, HCO3_carb -> CO2_carb
1 * CO2 Fixation, CO2_carb ->
1 * HCO3 Membrane Transport, -> HCO3_cyt
+4# Irreversible
Reactions:
1 * HCO3 carboxysome transport in, HCO3_cyt = HCO3_carb
1 * CO2 membrane transport in, -> CO2_cyt
1 * HCO3 Dehydration carb, HCO3_carb -> CO2_carb
1 * CO2 Hydration cyt, CO2_cyt -> HCO3_cyt
1 * CO2 Fixation, CO2_carb ->

Analysis data:     SBRML
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI