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Biochemical Space

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Below is displayed the entity view of the selected entity. Entity view is shown in the form of scheme expressing relations part of (green), contains (orange), substrate of rule (red) and product of rule (blue). The navigation panel on the left shows the entity in corresponding model and allows you to browse the biological structure of the model. Manipulation with the navigation panel is realized by unfolding the items in the navigation tree and clicking on a requested system level.

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Relations Tab contains information about relations in which selected entity figures. There are several types of relations: part of, contains, partial composition items and full composition items. This tab also contains organism info which is optional.

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Processes Tab
This tab contains set of processes in which selected entity is present.

plastoquinone [pq]



Part of:

States:

oxidation of NADPH and reduction of plastoquinone in the thylakoid membrane
Rule: NADPH::cyt + 5 h{+}::cyt + pq::tlm => NADP{+}::cyt + 4 h{+}::lum + pqh2::tlm
modifier: NDH1
Details
a plastoquinone from the pool binds to the Qb-binding pocket of the PSII D1 protein
Rule: qb{empty}::ps2::tlm + pq::tlm <=> qb{n}::ps2::tlm
Details
oxidation of plastoquinole in the cytoplasmic membrane
Rule: pqh2::cym + O2::cyt + 2 h{+}::cyt => pq::cym + 2 H2O::cyt
modifier: CydBD
Details
oxidation of plastoquinole in the thylakoid membrane
Rule: pqh2::tlm + O2::lum + 2 h{+}::lum => pq::tlm + 2 H2O::lum
modifier: CydBD
Details
oxidation of succinate and reduction of plastoquinone in the cytoplasmic membrane
Rule: succinate::cyt + pq::cym => fumarate::cyt + pqh2::cym
modifier: SDH
Details
oxidation of succinate and reduction of plastoquinone in the thylakoid membrane
Rule: succinate::cyt + pq::tlm => fumarate::cyt + pqh2::tlm
modifier: SDH
Details
oxidation of NADH and reduction of plastoquinone in the cytoplasmic membrane
Rule: NADH::cyt + h{+}::cyt + pq::cym => NAD+::cyt + pqh2::cym
Details
oxidation of NADH and reduction of plastoquinone in the thylakoid membrane
Rule: NADH::cyt + h{+}::cyt + pq::tlm => NAD+::cyt + pqh2::tlm
modifier: NDH2
Details
oxidation of NADPH and reduction of plastoquinone in the thylakoid membrane
Rule: NADPH::cyt + 4 h{+}::cyt + pq::cym + H2O::cyt + CO2::pps => NADP{+}::cyt + 4 h{+}::pps + pqh2::cym + HCO3{-}::cyt
modifier: NDH1_4
Details
oxidation of NADPH and reduction of plastoquinone in the thylakoid membrane
Rule: NADPH::cyt + 4 h{+}::cyt + pq::tlm + H2O::cyt + CO2::lum => NADP{+}::cyt + 4 h{+}::lum + pqh2::tlm + HCO3{-}::cyt
modifier: NDH1_3
Details
oxidation of NADPH and reduction of plastoquinone in the cytoplasmic membrane
Rule: NADPH::cyt + 5 h{+}::cyt + pq::cym => NADP{+}::cyt + 4 h{+}::pps + pqh2::cym
modifier: NDH1
Details
Rule: C17570::cyt + C00019::cyt => pq::cyt + C00021::cyt + 2 h{+}::cyt
Details
Rule: pq::cyt => pq::tlm
Details
Rule: pq::cyt => pq::cym
Details