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Biochemical Space

Below is displayed the entity view of the selected entity. Entity view is shown in the form of scheme expressing relations part of (green), contains (orange), substrate of rule (red) and product of rule (blue). The navigation panel on the left shows the entity in corresponding model and allows you to browse the biological structure of the model. Manipulation with the navigation panel is realized by unfolding the items in the navigation tree and clicking on a requested system level.

Annotations Tab
All the annotation links to relevant databases for the currently selected entity are displayed on the Annotation Tab below the scheme.

Models Tab
The Models Tab displays all models containing selected entity.

Relations Tab
Relations Tab contains information about relations in which selected entity figures. There are several types of relations: part of, contains, partial composition items and full composition items. This tab also contains organism info which is optional.

Rules Tab
Rules tab contains list of rules which contains selected entity.

Processes Tab
This tab contains set of processes in which selected entity is present.

circadian clock protein kinase KaiC [KaiC]

Monomer component representing a core component of the circadian clock system.

Part of:

Definition in BCS:


Organism info:

Synechococcus elongatus PCC 7942{Synpcc7942_1216}
KaiC molecule is phosphorylated/dephosphorylated on serine amino acid in KaiC hexamer.
Rule: S{u}::KaiC::?X::cyt <=> S{p}::KaiC::?X::cyt ; ?X = {KaiC6, KaiA2C6, KaiA4C6, KaiB6C6, KaiA4B6C6, KaiA6B6C6}
KaiC molecule is phosphorylated/dephosphorylated on threonine amino acid in KaiC hexamer.
Rule: T{u}::KaiC::?X::cyt <=> T{p}::KaiC::?X::cyt ; ?X = {KaiC6, KaiA2C6, KaiA4C6, KaiB6C6, KaiA4B6C6, KaiA6B6C6}
Formation of KaiC hexamer from six KaiC molecules and its dissociation.
Rule: 6 KaiC::cyt <=> KaiC6::cyt
Translation of KaiB and KaiC proteins from its shared mRNA.
Rule: kaiBC_mRNA::cyt => KaiB::cyt + KaiC::cyt
Degradation of KaiC protein.
Rule: KaiC::cyt =>

Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI