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Model repository

Models

+ Miyoshi et al. 2007
+ Plyusnina et al. (in prep.)
+ Hertel et al. 2013
+ Jablonsky et al. 2014
+ Clark et al. 2014 (in progress)
+ Fridlyand et al. 1995
o Grimaud et al. 2014
o E-cyano team 2017, clock & C-N metabolism
o Müller et al. 2019

Stoichiometry matrix of Fridlyand et al. 1995

This page displays stoichiometry matrix of selected model

Entities are in rows, rules in columns

You can also download SBRML file clicking on link below.


(Dehydration of HCO3- in cyt_i) (Dehydration of HCO3- in carb) (Hydration of CO2 in carb) (Hydration of CO2 in cyt_i) (Dehydration of HCO3- in cyt_e) (Hydration of CO2 in cyt_e) (Conversion of CO2 to HCO3- cyt_e -> cyt_e) (Fixation of CO2) (HCO3- transport pps -> cyt_e) (HCO3- transport cyt_e -> pps) (Outward diffusion of CO2 carb -> c_i) (Diffusion of HCO3- c_i -> carb) (Outward diffusion of CO2 c_i -> c_e) (Inward diffusion of accumulated HCO3- c_e -> c_i) (Passive diffusion of CO2) (Diffusion of HCO3- c_e -> pps) (Diffusion of HCO3_m) (Diffusion of CO2)
HCO3_m_ocyt 0 0 0 0 -1 1 1 0 1 -1 0 0 0 -1 0 -1 0 0
CO2_carb 0 1 -1 0 0 0 0 -1 0 0 -1 0 0 0 0 0 0 0
HCO3_m_icyt -1 0 0 1 0 0 0 0 0 0 0 -1 0 1 0 0 0 0
CO2_cyt_ocyt 0 0 0 0 1 -1 -1 0 0 0 0 0 1 0 1 0 0 0
CO2_cyt_icyt 1 0 0 -1 0 0 0 0 0 0 1 0 -1 0 0 0 0 0
HCO3_m_pps 0 0 0 0 0 0 0 0 -1 1 0 0 0 0 0 1 1 0
CO2_pps 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 1
HCO3_m_carb 0 -1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
HCO3_m_liq 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0
CO2_liq 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1



Analysis data:     SBRML
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI