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Model repository

Models

+ Miyoshi et al. 2007
+ Plyusnina et al. (in prep.)
+ Hertel et al. 2013
+ Jablonsky et al. 2014
+ Clark et al. 2014 (in progress)
+ Fridlyand et al. 1995
o Grimaud et al. 2014
o E-cyano team 2017, clock & C-N metabolism
o Müller et al. 2019

Simulation of Müller et al. 2019

The SBML file representing the requested model is shown below. Click "SBML download" to save the file into your client file system. The SBML file can be used for further analysis of the model by using third party tools.

SBML download
Missing a required XML attribute. The species attribute 'id' is required.
Missing a required XML attribute. The attribute 'symbol' is required.


<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level2/version4" level="2" version="4">
  <model id="M46">
    <annotation>
      <rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.model/46/"/>
    </annotation>
    <listOfCompartments>
      <compartment id="Medium" size="1"/>
    </listOfCompartments>
    <listOfSpecies>
      <species compartment="Medium" initialConcentration="0"/>
      <species compartment="Medium" initialConcentration="0"/>
      <species compartment="Medium" initialConcentration="0"/>
      <species compartment="Medium"/>
      <species compartment="Medium" initialConcentration="0"/>
      <species id="CP" compartment="Medium" initialConcentration="0"/>
      <species id="TA" compartment="Medium" initialConcentration="0"/>
    </listOfSpecies>
    <listOfInitialAssignments>
      <initialAssignment/>
    </listOfInitialAssignments>
  </model>
</sbml>
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI